Basic Information
VIS ID
TVIS42000774
Fusion event
EBV-chr6 integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Cell line
Disease
B-cell lymphoma (BL)
Quality evaluation
Normal
Reported year
2005
PubMed ID
15681063
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
132234
Orient
+
Integrated sequence
CCAGGAGAAGGGGTCTGGCGTCTTGCTGGGGCCACACTCCCGGCTACGGGGCTTCGGGGTAGGGGCAGTAGGCTTTTGGTGTGCGGGTGCTGGTGGCTGG| |GCTCCCCTGGGCAGGGTAAAGGGGCACGATGTGTGCCGGCTACCCGGAGAGTTTCCAGTATTAGATGTCACGGCAGCCTGGGTCCGGCACGGCACCCTCT
Host Sequence
Chromosome
chr6
Cytoband
q13
Reference genome
GRCh37/hg19
Start
74300651/73590928 (Hg38)
End
74300651/73590928 (Hg38)
Orient
+
Location type
Intergenic
Fragile sites / regions
FRA6D
Nearest miRNA
hsa-mir-10398/Upstream/623175; hsa-mir-10524/Downstream/1837479;
Nearest TSS
ENST00000381078/Upstream/67087; ENST00000474094/Downstream/53535;
Nearest CpG islands
None/Target, chr6-CpG: 120/Upstream/67105, chr6-CpG: 94/Downstream/62551
Nearby gene
SLC17A5(+2451) ;
Upstream sequence
cttgtcagatatacacttagcaaaatatgtacaggttgtatatgctgaaaattacagaatagatgactgaaattaaataagtcttaagcaaataaagaga
Downstream sequence
tgagactgagattcgctcttgttgcccaggctggagtgcaattgcgtgatcttggctcaccgcaacctctgcctcctgggttcaagcgattctcctgcct
Reference
Takakuwa, T., et al. Identification of Epstein-Barr virus integrated sites in lymphoblastoid cell line (IB4). Virus Res,2005, 108(1-2): 133-138.
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