Basic Information
VIS ID
TVIS42000775
Fusion event
EBV-chr6 integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Cell line
Disease
B-cell lymphoma (BL)
Quality evaluation
Normal
Reported year
2005
PubMed ID
15681063
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
147142
Orient
+
Integrated sequence
ATATGGGAGGAGGGGGGCTTTGGGTTCCATTGTGTGCCCTTTCCTGGCCAACGTGAGGGTCCTAGTGTTATAGGGCGTGGCAGTTTTCTTGAGGGCTAAT| |AACCCGGGTGAGGCGGTTGTCACAGGTGCTAGACCCTGGAGTTGAACCAGTACCACTCGGTTACAAAGTCATGGTCTAGTAGTTGTGACCCTGCAAAGCT
Host Sequence
Chromosome
chr6
Cytoband
q13
Reference genome
GRCh37/hg19
Start
74673011/73963295 (Hg38)
End
74673011/73963295 (Hg38)
Orient
+
Location type
Intergenic
Fragile sites / regions
FRA6D
Nearest miRNA
hsa-mir-10398/Upstream/995542; hsa-mir-10524/Downstream/1465112;
Nearest TSS
ENST00000381078/Upstream/170640; ENST00000421318/Downstream/106156;
Nearest CpG islands
None/Target, chr6-CpG: 120/Upstream/266884, chr6-CpG: 28/Downstream/1121869
Upstream sequence
ttctgcagaatgaccctaacggaagggattcacttttctttatcttttctcctttctgatggttggaggctggccatggtggctacaactggagcagcca
Downstream sequence
atcttgtagctatctgtttaggaacaaaaggaaaggcagctgtttttgcatgactcagtttccaagtttaacttttccttttggcatagtgagtttgggt
Reference
Takakuwa, T., et al. Identification of Epstein-Barr virus integrated sites in lymphoblastoid cell line (IB4). Virus Res,2005, 108(1-2): 133-138.
Curate