Basic Information
VIS ID
TVIS42000777
Fusion event
EBV-LINC02542 integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Cell line
Disease
B-cell lymphoma (BL)
Quality evaluation
Normal
Reported year
2005
PubMed ID
15681063
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
155175
Orient
+
Integrated sequence
TGCCCAGAGAGGCTGGGTTGATGCTGTAGATGTGCCTGGCTCTGTCCAGAATGTAGGGCCAGTCAAAGTTGGCCACGTTGTAGCCGGTCACAATCTCCAC| |GCTGAGGTCTCTGATGAGCTGGAAGAAGGCGTAGAGCATGTCCAGCTCCGATGGGAACTCGTAGACCTCAACCCCCTCTATGTCTTCGCAGGTGCCCAGC
Host Sequence
Chromosome
chr6
Cytoband
q14.1
Reference genome
GRCh37/hg19
Start
82633789/81924072 (Hg38)
End
82633789/81924072 (Hg38)
Orient
+
Location type
Intronic
Target gene
LINC02542
Nearest miRNA
hsa-mir-10398/Upstream/3384763; hsa-mir-1202/Downstream/8388670;
Nearest TSS
ENST00000381078/Upstream/109915; ENST00000535040/Downstream/9408;
Nearest CpG islands
None/Target, chr6-CpG: 120/Upstream/169984, chr6-CpG: 49/Downstream/323210
Upstream sequence
AAACTGGGGGAAAATCTAATTTGAATGCCTGCCTCTCCTTCAAGTTCTCCCTGCATCCTAACCGCCCCCCCAACCCCTGccaccctcgccaccacccctc
Downstream sequence
taacatcttgatctatattgaaaatcttaaggaattcacaaaaagactacaagaactaataagtgagtccagtgaggtcacaggatacaaggtaaacata
Reference
Takakuwa, T., et al. Identification of Epstein-Barr virus integrated sites in lymphoblastoid cell line (IB4). Virus Res,2005, 108(1-2): 133-138.
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