VISDB Viral Integration Site DataBase

VIS ID

TVIS42000778

Fusion event

EBV-PGM3 integration

Validated

No

Detection method

WGS

Data source

Curated

Sample type

Disease

B-cell lymphoma (BL)

Quality evaluation

Normal

Reported year

2005

PubMed ID

Virus name

EBV

Reference genome

Start

111494

Orient

-

Integrated sequence

TCCACCCGCTCTAGCTGCTTGTAGTTGATTTTTGGAAATTGAGTCTTGGTCGCGGTGACCACCCTCTGATAGGTAGAAATTAGCTGTTTGGACTCAAACG| |TCTCCCTTGCGTGGCGCAGGGACTCTAAGGCACCCCGAGCAGATGTAAACTGTGTTTCAAACAGAGCGTGGTCCCTCCCAAATCTGTCACGTGCGCTCAC

Chromosome

chr6

Cytoband

q14.1

Reference genome

Start

End

83899730/83190011 (Hg38)

Orient

+

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-30b-5p ; hsa-mir-215-5p ; hsa-mir-192-5p ; hsa-let-7b-5p ; hsa-mir-455-3p ; hsa-mir-125a-5p ; hsa-mir-6509-5p ; hsa-mir-331-5p ; hsa-mir-3689f ; hsa-mir-3689e ; hsa-mir-3689b-5p ; hsa-mir-3689a-5p ; hsa-mir-3145-3p ; hsa-mir-8062 ; hsa-mir-126-5p ; hsa-mir-8079 ; hsa-mir-1245a ; hsa-mir-4496 ; hsa-mir-944 ; hsa-mir-7844-5p ; hsa-mir-30e-5p ; hsa-mir-30d-5p ; hsa-mir-30a-5p ; hsa-mir-30c-5p ; hsa-mir-33b-5p ; hsa-mir-33a-5p ; hsa-mir-340-5p ; hsa-mir-20a-3p ; hsa-mir-216b-5p ; hsa-mir-588 ; hsa-mir-4701-5p ; hsa-mir-7703 ; hsa-mir-4252 ; hsa-mir-676-5p ; hsa-mir-4793-3p ; hsa-mir-3190-5p ; hsa-mir-6891-3p ; hsa-mir-6072 ; hsa-mir-1273g-3p ; hsa-mir-483-3p ; hsa-mir-193b-3p ; hsa-mir-193a-3p ; hsa-mir-557 ; hsa-mir-507 ; hsa-mir-500a-3p ; hsa-mir-767-5p ; hsa-mir-4275 ; hsa-mir-1282 ; hsa-mir-4714-3p ; hsa-mir-548ay-3p ; hsa-mir-548at-3p ; hsa-mir-548z ; hsa-mir-548h-3p ; hsa-mir-548d-3p ; hsa-mir-548bb-3p ; hsa-mir-548ac

Nearest miRNA

hsa-mir-10398/Upstream/4650702; hsa-mir-1202/Downstream/7122731;

Nearest TSS

Nearest CpG islands

None/Target, chr6-CpG: 120/Upstream/122029, chr6-CpG: 113/Downstream/2876

Upstream sequence

AATTTAAGTTGATTCCTAAATAAAATTTAACTTACAATTTTTAAAGGGTTCTTTATCCTAGAATGACCaaaaattaaattaaattttaaatCAAGCCTAC

Downstream sequence

ataaacttgcagttataagatgaataagttctggaagactaacgtacagcgtggtgactatagttcataataatatatattgaaaatgtgttgagcgtac