Basic Information
VIS ID
TVIS42000779
Fusion event
EBV-LOC105377885 integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Cell line
Disease
B-cell lymphoma (BL)
Quality evaluation
Normal
Reported year
2005
PubMed ID
15681063
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
105738
Orient
-
Integrated sequence
GGGGGCCAGATTTGTTGTAGGAGCAGCGAGCCGCGTCGTTGCCCTGACCGCGCGTCGAGGCCCAGGAGGGCGTCTGCCAGGGGCGTCCCAGAGACTCCCA| |GGTTCAGGTCCAGTAGCAGGAGACCCTCGCTGTGTGGCGCCCGGTGCCAGAAGGCCGGCCTCGCCCGTCCCACATAATGGATGGGCAGGAAGGGAAAGCC
Host Sequence
Chromosome
chr6
Cytoband
q15
Reference genome
GRCh37/hg19
Start
89151484/88441765 (Hg38)
End
89151484/88441765 (Hg38)
Orient
+
Location type
Intronic
Fragile sites / regions
FRA6G
Target gene
LOC105377885
Nearest miRNA
hsa-mir-10398/Upstream/9902456; hsa-mir-1202/Downstream/1870977;
Nearest TSS
ENST00000381078/Upstream/20732; ENST00000354922/Downstream/521644;
Nearest CpG islands
None/Target, chr6-CpG: 120/Upstream/274035, chr6-CpG: 60/Downstream/521400
Upstream sequence
aatgattggctttgagtgatggagttacctggtgagcccttccagattaaaattctacaaaatgcatgcctttggtgacttgctatctagtattagaaac
Downstream sequence
CATCATTCTGCACTTGCTATAGGTTTTGGCCCCAATTTTTGCCACTATTCAGCCCTGGTACTGGCTTTTGGCCTCAACCCAAATCCTCAGACCACCTCAA
Reference
Takakuwa, T., et al. Identification of Epstein-Barr virus integrated sites in lymphoblastoid cell line (IB4). Virus Res,2005, 108(1-2): 133-138.
Curate