Basic Information
VIS ID
TVIS42000780
Fusion event
EBV-chr6 integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Cell line
Disease
B-cell lymphoma (BL)
Quality evaluation
Normal
Reported year
2005
PubMed ID
15681063
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
168670
Orient
+
Integrated sequence
TGTTAGATCTTACCAAGTAAGCACCCGAAGATGAACAGCACAATTCCAAGGAACAATGCCTGTCCGTGCAAATTCCAGAGAGCGATGAGCAGGAGGGTGA| |CTGGGGAAAGAGGAGAAAGTGCGTTAGAGAAGGAAGAGTAAGGGAAAGGGGGTGTGGGGCAAAGGGTGTAATACTTACTCATCAGTAGGAGTATACAAAG
Host Sequence
Chromosome
chr6
Cytoband
q16.1
Reference genome
GRCh37/hg19
Start
93607880/92898162 (Hg38)
End
93607880/92898162 (Hg38)
Orient
+
Location type
Intergenic
Fragile sites / regions
FRA6G
Nearest miRNA
hsa-mir-10398/Upstream/1376425; hsa-mir-1202/Downstream/5126369;
Nearest TSS
ENST00000381078/Upstream/174333; ENST00000452624/Downstream/172225;
Nearest CpG islands
None/Target, chr6-CpG: 120/Upstream/2286662, chr6-CpG: 92/Downstream/518392
Upstream sequence
CTTCATTCTGACAGGAGAGCCAACCCAACCCTAACTGTGTTCAGAGATTGCTCCAAGCTTTACAGTTCTACCAAATTCTTTCTGTAGCAAAAATATAAAG
Downstream sequence
TTGCCATCCCAGAATATCTCTTCTTATGGAGGTTGATATTCTTTATAAGACAATTTTATACAGTCAAAATACTCTTTCATTTTTGATAAATGAATATAAT
Reference
Takakuwa, T., et al. Identification of Epstein-Barr virus integrated sites in lymphoblastoid cell line (IB4). Virus Res,2005, 108(1-2): 133-138.
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