Basic Information
VIS ID
TVIS42000781
Fusion event
EBV-chr6 integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Cell line
Disease
B-cell lymphoma (BL)
Quality evaluation
Normal
Reported year
2005
PubMed ID
15681063
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
78989
Orient
-
Integrated sequence
CCACATATGTGATGTCTGTGGTGTTTGTCGGCATGTCCTGTGAAGCTGGAATCTCATCAGAGAACACAATGTTGGACTGAATGCAGTAATCTCCCCCGCT| |CGCCTTCGGTCCATTCCCAGAGTAAAACACGTACAGGATACTGTTATTGCCAAGAAATCGTGACACTGGACGTGGTGTCAGACGCAGGCTGTATGCATAC
Host Sequence
Chromosome
chr6
Cytoband
q16.1
Reference genome
GRCh37/hg19
Start
99088585/98640709 (Hg38)
End
99088585/98640709 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-10398/Upstream/616088; hsa-mir-1202/Downstream/483900;
Nearest TSS
ENST00000381078/Upstream/426026; ENST00000328345/Downstream/191799;
Nearest CpG islands
None/Target, chr6-CpG: 120/Upstream/1357386, chr6-CpG: 50/Downstream/183809
Nearby gene
LOC110120985(+776) ;
Upstream sequence
gatgggtagatagatgaatatctagatgggtggatggatcaatgggtagatatatgatggatggatggatggataaatgaatagatagatggtgggtgga
Downstream sequence
CATTAAAAGAGAATGCCTATAATTAGGCCTTGGACACACATGTTAATAAGTGAGGAACAGCTATGTCTTCCCACAATAGAGCCTGATCATTTCCATCAGG
Reference
Takakuwa, T., et al. Identification of Epstein-Barr virus integrated sites in lymphoblastoid cell line (IB4). Virus Res,2005, 108(1-2): 133-138.
Curate