Basic Information
VIS ID
TVIS42000783
Fusion event
EBV-LINC02532 integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Cell line
Disease
B-cell lymphoma (BL)
Quality evaluation
Normal
Reported year
2005
PubMed ID
15681063
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
147116
Orient
+
Integrated sequence
AGTGACAACTATGCTGAATATCTTGAATATGGGAGGAGGGGGGCTTTGGGTTCCATTGTGTGCCCTTTCCTGGCCAACGTGAGGGTCCTAGTGTTATAGG| |GCGTGGCAGTTTTCTTGAGGGCTAATAACCCGGGTGAGGCGGTTGTCACAGGTGCTAGACCCTGGAGTTGAACCAGTACCACTCGGTTACAAAGTCATGG
Host Sequence
Chromosome
chr6
Cytoband
q21
Reference genome
GRCh37/hg19
Start
107188032/106740157 (Hg38)
End
107188032/106740157 (Hg38)
Orient
-
Location type
Intronic
Fragile sites / regions
FRA6F
Target gene
LINC02532
Nearest miRNA
hsa-mir-10398/Upstream/7615461; hsa-mir-1202/Downstream/43968;
Nearest TSS
ENST00000381078/Upstream/70; ENST00000489790/Downstream/5847;
Nearest CpG islands
None/Target, chr6-CpG: 120/Upstream/227047, chr6-CpG: 236/Downstream/233183
Upstream sequence
aaagatttaaataagagatatgtcatgttcatagattggaagactaagtattattaattaccagttctctccaaacttatctatagattaatttcaattc
Downstream sequence
tgagattgtgccactgcactccagcctgggtgacagagcgagactctgtctcaaaaaaataaattaaaaaaaaaaagaaagaaaGAAATTGAGGCTTAAA
Reference
Takakuwa, T., et al. Identification of Epstein-Barr virus integrated sites in lymphoblastoid cell line (IB4). Virus Res,2005, 108(1-2): 133-138.
Curate