Basic Information
VIS ID
TVIS42000784
Fusion event
EBV-AK9 integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Cell line
Disease
B-cell lymphoma (BL)
Quality evaluation
Normal
Reported year
2005
PubMed ID
15681063
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
55119
Orient
+
Integrated sequence
TGCCGCAGCTTCTTCTCATACTGTCGCTTGAGCTCTTTGTTGGGGGCAGTGTCCAGAAAGGCCTCGAGCTGTTCCTCGGTGGCGGGCTTAAAGCCTTCGG| |CCTCCAGGCGCCAGGCCTGCACCTCCTTCTGTCTGAGCTGATCGTTGTTGTTATTCTTCAATTTCTGCAGGTAACTTAGGAAGCGTTTCTTGAGCTTCCC
Host Sequence
Chromosome
chr6
Cytoband
q21
Reference genome
GRCh37/hg19
Start
109821141/109499938 (Hg38)
End
109821141/109499938 (Hg38)
Orient
+
Location type
Intronic
Fragile sites / regions
FRA6F
Target gene
AK9
Nearest miRNA
hsa-mir-10398/Upstream/2715718; hsa-mir-1202/Downstream/9569109;
Nearest TSS
ENST00000381078/Upstream/12032; ENST00000454215/Downstream/6480;
Nearest CpG islands
None/Target, chr6-CpG: 120/Upstream/16649, chr6-CpG: 20/Downstream/190448
Upstream sequence
CATCCTGCTGGTATCTTTCTTTGTATGTAAAAATTTCCTTTCTGAGTCTTAGCCCAAACGTGATTTCTTTAGATTTTTCCCATGTGTTTATGTGGTTAGA
Downstream sequence
actgtataaacatacatgtagtttactcaaccatttatctattggtgaatgttttggccgttttagttcttagctattatagactatATATATGATacac
Reference
Takakuwa, T., et al. Identification of Epstein-Barr virus integrated sites in lymphoblastoid cell line (IB4). Virus Res,2005, 108(1-2): 133-138.
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