Basic Information
VIS ID
TVIS42000786
Fusion event
EBV-chr6 integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Cell line
Disease
B-cell lymphoma (BL)
Quality evaluation
Normal
Reported year
2005
PubMed ID
15681063
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
59124
Orient
+
Integrated sequence
CTCTTGACCAGGTAGAGGACGCAGTTGCTGACGCACTGGATGCCGGCAAAGCGGCCAAACTTGCAGTGGGCCTGGTTGCACGAGGCCGTGCCTAGGATGC| |GGAGGGCCGAGCCTCCACTCCCGCCCCCGGGGGCATTCACATCCATGGTCCTGATTCCGCGCACGGGGCCGGTTCCCCGGGTGCGCTGGCTTTGCCCCCA
Host Sequence
Chromosome
chr6
Cytoband
q22.33
Reference genome
GRCh37/hg19
Start
128877703/128556558 (Hg38)
End
128877703/128556558 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-mir-10398/Upstream/2071845; hsa-mir-1202/Downstream/3235614;
Nearest TSS
ENST00000381078/Upstream/35884; ENST00000466230/Downstream/326583;
Nearest CpG islands
None/Target, chr6-CpG: 120/Upstream/35577, chr6-CpG: 27/Downstream/23850
Upstream sequence
acacatgcctacactacacactcatacatacctacacacacttatacagacctacaccacacacacatcatacacacactcacaccacacacacacactc
Downstream sequence
aacctaCTTGTAACTACTAGGAATTCCCTAATATTGAGAAGCAAAACATAGATGATCCAGAGAGGACCATGGATTAGACTGAGAGAATAGGGGAAGAAGA
Reference
Takakuwa, T., et al. Identification of Epstein-Barr virus integrated sites in lymphoblastoid cell line (IB4). Virus Res,2005, 108(1-2): 133-138.
Curate