VISDB Viral Integration Site DataBase

VIS ID

TVIS42000787

Fusion event

EBV-PDE7B integration

Validated

No

Detection method

WGS

Data source

Curated

Sample type

Disease

B-cell lymphoma (BL)

Quality evaluation

Normal

Reported year

2005

PubMed ID

Virus name

EBV

Reference genome

Start

124431

Orient

+

Integrated sequence

TGACAATAAACACCCCCCCCACTGGCTCTCCCCCCTTGGCGGTCGTGTAGGTACTGACCCCCTTGAGCACGCTCTCCCCGGACACGGCCGCTACCATCTC| |AGAGAGACGGCTTCGCACGTACTGAGAAAACCCGGAGCCCATGTTCTCGGCCCGGTCCAGGAAGAAGGAGTGCTCCAGCAGATGCCTCTTGAACATGGCA

Chromosome

chr6

Cytoband

q23.3

Reference genome

Start

End

136512775/136191637 (Hg38)

Orient

+

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-6780a-5p ; hsa-mir-6779-5p ; hsa-mir-3689c ; hsa-mir-3689b-3p ; hsa-mir-3689a-3p ; hsa-mir-30b-3p ; hsa-mir-1273h-5p ; hsa-mir-6778-5p ; hsa-mir-1233-5p ; hsa-mir-6799-5p ; hsa-mir-6883-5p ; hsa-mir-6785-5p ; hsa-mir-4728-5p ; hsa-mir-7106-5p ; hsa-mir-149-3p ; hsa-mir-4736 ; hsa-mir-766-5p ; hsa-mir-940 ; hsa-mir-6893-5p ; hsa-mir-6808-5p ; hsa-mir-4662b ; hsa-mir-4647 ; hsa-mir-4426 ; hsa-mir-335-3p ; hsa-mir-1305 ; hsa-mir-607 ; hsa-mir-6715b-3p ; hsa-mir-4717-3p ; hsa-mir-6715a-3p

Nearest miRNA

hsa-mir-10398/Upstream/952381; hsa-mir-1202/Downstream/2243576;

Nearest TSS

Nearest CpG islands

None/Target, chr6-CpG: 120/Upstream/693615, chr6-CpG: 51/Downstream/58345

Upstream sequence

catcaccatcatcaccatcaccatcatatcaccatcaccaccatcacatcaccatcatcaccattaccaccatcatcaccattaccatcatcaccatcac

Downstream sequence

CGCTCTTCCGGGAATGGGCCCATTTCACGGGTAACAGCACCCTGTCGGAGAACATGCTGGGCCACCTCGCACACAACAAGGCCCAGTGGAAGAGCCTGTT