Basic Information
VIS ID
TVIS42000789
Fusion event
EBV-chr6 integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Cell line
Disease
B-cell lymphoma (BL)
Quality evaluation
Normal
Reported year
2005
PubMed ID
15681063
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
64989
Orient
+
Integrated sequence
GCCTACATGGAGCCCTGGCACAGCCAGATTTTCAAGTTTTTGGAAACGAAGCTGCCGGAGAACCACGAGAGGTGCCCGGGCATCTTTACGGGGCTCTTTG| |TCCCCGAGCTCTTCTTCAAGCTTTTTAGGGACACGCCCTGGTCGGACTGGTACCTGTTTGACCCCAAGGACGCCGGGGACCTGGAGAGGCTCTACGGGGA
Host Sequence
Chromosome
chr6
Cytoband
q24.1
Reference genome
GRCh37/hg19
Start
141550995/141229858 (Hg38)
End
141550995/141229858 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-10398/Upstream/545975; hsa-mir-1202/Downstream/9872817;
Nearest TSS
ENST00000381078/Upstream/376934; ENST00000565399/Downstream/217153;
Nearest CpG islands
None/Target, chr6-CpG: 120/Upstream/1854417, chr6-CpG: 46/Downstream/858478
Upstream sequence
TATTCTGTTACTCTGTGGATTCTGAGACTTGCTCAAGATGCTTCATGCCTTTCTCCTTAAACCTATCTGTGTTCTCCTCGACGGATCTGGGTAAGTCATC
Downstream sequence
tataccatttgcatgaatcggaagagtcagcttaataaatattttaattattctcaaattaatctataagcttaacaaaattcctatcaaaatcccacta
Reference
Takakuwa, T., et al. Identification of Epstein-Barr virus integrated sites in lymphoblastoid cell line (IB4). Virus Res,2005, 108(1-2): 133-138.
Curate