Basic Information
VIS ID
TVIS42000790
Fusion event
EBV-LOC105378036 integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Cell line
Disease
B-cell lymphoma (BL)
Quality evaluation
Normal
Reported year
2005
PubMed ID
15681063
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
64683
Orient
+
Integrated sequence
GATTACTACTTTGAGCACCTAACCTCCCAGACGGTGTGCTGCTCCACGCCCTTTATGCGCTTTGCCGGGGTGGAAAACTCCACTCTGGCCAGCTGCATCC| |TCACCACCCCCGACCTCAGCTCCGAGTGGGACGTGACCCAGGCCCTCTATAGGCACCTGGGGCGCTACCTCTTTCAGCGAGCCGGGGTGGGTGTAGGGGT
Host Sequence
Chromosome
chr6
Cytoband
q24.2
Reference genome
GRCh37/hg19
Start
144446414/144125277 (Hg38)
End
144446414/144125277 (Hg38)
Orient
+
Location type
Intronic
Target gene
LOC105378036
Nearest miRNA
hsa-mir-10398/Upstream/3441394; hsa-mir-1202/Downstream/6977398;
Nearest TSS
ENST00000381078/Upstream/29704; ENST00000367568/Downstream/25249;
Nearest CpG islands
None/Target, chr6-CpG: 120/Upstream/29560, chr6-CpG: 106/Downstream/24655
Upstream sequence
ACAGGCCTGCATTTCAGTGAATGGTTCTACAATTCTTGCCATAATCCACATTCTAAAACTTTGTTCTATGAGCTAATGATGTAAAATCTTGTGTGTGATT
Downstream sequence
tttgggtggtgaggtgagttcaagatggaagccaagcacaacctagaaggaccctgactccctgacaccatggtttgccatatgggacctggactgattc
Reference
Takakuwa, T., et al. Identification of Epstein-Barr virus integrated sites in lymphoblastoid cell line (IB4). Virus Res,2005, 108(1-2): 133-138.
Curate