Basic Information
VIS ID
TVIS42000792
Fusion event
EBV-LOC101928868 integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Cell line
Disease
B-cell lymphoma (BL)
Quality evaluation
Normal
Reported year
2005
PubMed ID
15681063
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
42373
Orient
-
Integrated sequence
GAGACATTTACAGAAACTTGGAACAGATTTATAACACACACCGAACATGTGGATCTGGATTTTAACTCAGTATTTTTAGAGATATTTCACCGTGGAGACC| |CAAGCCTTGGGCGCGCGTTGGCCTGGATGGCCTGGTGCATGCATGCCTGCAGGACATTGTGTTGTAACCAGTCTACTCCTTACTATGTTGTGGACCTGTC
Host Sequence
Chromosome
chr6
Cytoband
q25.2
Reference genome
GRCh37/hg19
Start
154832882/154511748 (Hg38)
End
154832882/154511748 (Hg38)
Orient
+
Location type
Intronic
Target gene
LOC101928868
Nearest miRNA
hsa-mir-10398/Upstream/3408972; hsa-mir-1202/Downstream/341612;
Nearest TSS
ENST00000381078/Upstream/1089; ENST00000464628/Downstream/221577;
Nearest CpG islands
None/Target, chr6-CpG: 120/Upstream/881, chr6-CpG: 139/Downstream/221304
Upstream sequence
AAACTGGGGGAAAATCTAATTTGAATGCCTGCCTCTCCTTCAAGTTCTCCCTGCATCCTAACCGCCCCCCCAACCCCTGccaccctcgccaccacccctc
Downstream sequence
ccctcaccccccaacaccccccccaaccccccacccccgccccGCCCCGCCCAGCAACCTCTTCCTCCCACTCTTTTTGGCACTGAATGATTCTTACTTT
Reference
Takakuwa, T., et al. Identification of Epstein-Barr virus integrated sites in lymphoblastoid cell line (IB4). Virus Res,2005, 108(1-2): 133-138.
Curate