Basic Information
VIS ID
TVIS42000793
Fusion event
EBV-WDR27 integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Cell line
Disease
B-cell lymphoma (BL)
Quality evaluation
Normal
Reported year
2005
PubMed ID
15681063
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
56185
Orient
+
Integrated sequence
GCAGGGAGGCGATGATCTGGCATGTGTGCCGCAGGTGTGTCAGGAGGTCGTCAAAATCCATCACTGTTGGGAGGCTTGGGTCCTCAAGGTAGGAGAGATA| |ATCGGAGGCCGCCGAGGCCACCTTGTCCCTGATGTCCGCCGTACACCTGCGCACGTGCAGGGCCGCATTCTTGGACCGGACGGCCACGTTGTGGACAAAG
Host Sequence
Chromosome
chr6
Cytoband
q27
Reference genome
GRCh37/hg19
Start
169912549/169512454 (Hg38)
End
169912549/169512454 (Hg38)
Orient
+
Location type
Intronic
Target gene
WDR27
Nearest miRNA
hsa-mir-10398/Upstream/2514542; hsa-mir-4644/Downstream/818307;
Nearest TSS
ENST00000381078/Upstream/85385; ENST00000332290/Downstream/136779;
Nearest CpG islands
None/Target, chr6-CpG: 120/Upstream/59869, chr6-CpG: 65/Downstream/64668
Upstream sequence
AATTTAAGTTGATTCCTAAATAAAATTTAACTTACAATTTTTAAAGGGTTCTTTATCCTAGAATGACCaaaaattaaattaaattttaaatCAAGCCTAC
Downstream sequence
AAAATAGAAATACAACGATAAGCCCAATGGGAACTTTAATTTGTAATGTTAATTCATTTAGCTACTTTACTCTAGAGGAGTCTAAGATTAGCAAAGCAAG
Reference
Takakuwa, T., et al. Identification of Epstein-Barr virus integrated sites in lymphoblastoid cell line (IB4). Virus Res,2005, 108(1-2): 133-138.
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