VISDB Viral Integration Site DataBase

VIS ID

TVIS42000794

Fusion event

EBV-SDK1 integration

Validated

No

Detection method

WGS

Data source

Curated

Sample type

Disease

B-cell lymphoma (BL)

Quality evaluation

Normal

Reported year

2005

PubMed ID

Virus name

EBV

Reference genome

Start

118527

Orient

+

Integrated sequence

TCCGGCCTCGGTGGCAGTGATGTTCTGTGCAGTAACCTTAGTGGTGACATTGATGGTGGATGCGTTGGAAGTTGTTGGGACTGGTGTGACAGTTGTCCCA| |GTGAATGTCACCGTGGTTGTGTTGGTGCTCAGAATAGCAGTTGTGGTTATAGGGGCGCTAGTCGTGGTCAAGGTCGTAGACTGGTTTGTGCTAGGACCCG

Chromosome

chr7

Cytoband

p22.2

Reference genome

Start

End

3778532/3738900 (Hg38)

Orient

+

Location type

Intronic

Fragile sites / regions

Target gene

miRNAs that regulate target gene

hsa-mir-615-3p ; hsa-mir-625-5p ; hsa-mir-6739-5p ; hsa-mir-6733-5p ; hsa-mir-3153 ; hsa-mir-3202 ; hsa-mir-6770-5p ; hsa-mir-1253 ; hsa-mir-3179 ; hsa-mir-1252-5p ; hsa-mir-3934-5p ; hsa-mir-764 ; hsa-mir-125a-3p ; hsa-mir-6794-5p ; hsa-mir-4716-3p ; hsa-mir-6876-5p ; hsa-mir-4476 ; hsa-mir-6758-5p ; hsa-mir-128-2-5p ; hsa-mir-128-1-5p ; hsa-mir-6780b-5p ; hsa-mir-4271 ; hsa-mir-4725-3p ; hsa-mir-6877-5p ; hsa-mir-5196-5p ; hsa-mir-4747-5p ; hsa-mir-4533 ; hsa-mir-6784-5p ; hsa-mir-6892-3p ; hsa-mir-6891-5p ; hsa-mir-6783-5p ; hsa-mir-3173-3p

Nearest miRNA

hsa-mir-339/Upstream/1211755; hsa-mir-10399/Downstream/1049665;

Nearest TSS

Nearest CpG islands

None/Target, chr7-CpG: 39/Upstream/436799, chr7-CpG: 21/Downstream/375113

Upstream sequence

ctgaggtctgagagcaccccccccagagaatccctgatctcccaaaatttggtcgagatctaacaactccttttttttttttttttttttgagttttact

Downstream sequence

attctaacaggttttttgtggaatctttagtgtgttctatgtataagatcaATTATTTTTGTTTTTTTGTTTTTTTAAAATATttccttatttttttctt