Basic Information
VIS ID
TVIS42000798
Fusion event
EBV-LOC100505938 integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Cell line
Disease
B-cell lymphoma (BL)
Quality evaluation
Normal
Reported year
2005
PubMed ID
15681063
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
151474
Orient
+
Integrated sequence
GGATTTAGGCAACGCAGGCTTGTCTTTATAGTTACAAACATGGGAGCGTGCACCTGGAAGATGCAGCTGGGGTAGATCTTTACATCTTTACAGGGCGCAG| |CGGCCGCCAGACACTGAAGGGCAGAGTTCACGGCGGGCACCTCCCAGAGGGAGCCCACCAGCCCGTACCTGGCCACGGCCAGGGCCTCGTAGGCCGAGAC
Host Sequence
Chromosome
chr7
Cytoband
p21.3
Reference genome
GRCh37/hg19
Start
8304618/8264988 (Hg38)
End
8304618/8264988 (Hg38)
Orient
+
Location type
Intronic
Target gene
LOC100505938
Nearest miRNA
hsa-mir-339/Upstream/1197943; hsa-mir-10399/Downstream/9862232;
Nearest TSS
ENST00000635602/Upstream/2301; ENST00000606016/Downstream/38753;
Nearest CpG islands
None/Target, chr7-CpG: 39/Upstream/2366, chr7-CpG: 152/Downstream/168521
Upstream sequence
gaactgaacagcaccaccatcaatcaacaagatataatgggcatctatagatgactttatccaacaacaccagcacacacattttttgcacactcacatg
Downstream sequence
AAGGTAAACCCAggcgaggatgtaaattggtggtggaaactgctggtgggaaagtaaaatggtgcaaccactttggaaaacagtctgaaagttccttaaa
Reference
Takakuwa, T., et al. Identification of Epstein-Barr virus integrated sites in lymphoblastoid cell line (IB4). Virus Res,2005, 108(1-2): 133-138.
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