Basic Information
VIS ID
TVIS42000799
Fusion event
EBV-chr7 integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Cell line
Disease
B-cell lymphoma (BL)
Quality evaluation
Normal
Reported year
2005
PubMed ID
15681063
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
70556
Orient
+
Integrated sequence
ATTGATTTAATCCAGGAACAAAAAACAGTCCTAGTGACCCAGTGCCCGGAGAGAGAATGGCCCTGACAAGTCGGCTGCATGATGCACTTCGGCAGTCACG| |TGTGTGAGTCTCCACGGCCTCTGTCAAAAGGGAGCTTAGCGTGCCAGGGTTGTAATTCTTGATGTAGTGGCCCAGGAATTCAACTTCATCGTGTCTCCGT
Host Sequence
Chromosome
chr7
Cytoband
p21.1
Reference genome
GRCh37/hg19
Start
17674950/17635326 (Hg38)
End
17674950/17635326 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-339/Upstream/10568281; hsa-mir-10399/Downstream/491894;
Nearest TSS
ENST00000635602/Upstream/76417; ENST00000448898/Downstream/44223;
Nearest CpG islands
None/Target, chr7-CpG: 39/Upstream/335849, chr7-CpG: 82/Downstream/304825
Upstream sequence
CTTCTGAGATTGGAACCCAGGGCAACAAAGCTAATGTGGGTTCTCCAAGATTAACACAACTGAAAGGAGGCCCCTTTATGCCATCTATTCTAGGTCCCTT
Downstream sequence
tttaCTACCATAAGACTTCCTATCAAAGGTGCTCAAAGTTCTTCATCCACTTAGTCttcaaaaaatgttttctgaggccctaatatgcacctaggcagtg
Reference
Takakuwa, T., et al. Identification of Epstein-Barr virus integrated sites in lymphoblastoid cell line (IB4). Virus Res,2005, 108(1-2): 133-138.
Curate