Basic Information
VIS ID
TVIS42000800
Fusion event
EBV-chr7 integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Cell line
Disease
B-cell lymphoma (BL)
Quality evaluation
Normal
Reported year
2005
PubMed ID
15681063
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
70501
Orient
+
Integrated sequence
TATTCCCATAGAATTACAGTGAGGTTACACAGGTGGAGATTCAGTTTAACCATTTATTGATTTAATCCAGGAACAAAAAACAGTCCTAGTGACCCAGTGC| |CCGGAGAGAGAATGGCCCTGACAAGTCGGCTGCATGATGCACTTCGGCAGTCACGTGTGTGAGTCTCCACGGCCTCTGTCAAAAGGGAGCTTAGCGTGCC
Host Sequence
Chromosome
chr7
Cytoband
p21.1
Reference genome
GRCh37/hg19
Start
19337275/19297652 (Hg38)
End
19337275/19297652 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-mir-1302-6/Upstream/1170343; hsa-mir-10399/Downstream/407706;
Nearest TSS
ENST00000635602/Upstream/152231; ENST00000412563/Downstream/55882;
Nearest CpG islands
None/Target, chr7-CpG: 39/Upstream/152242, chr7-CpG: 44/Downstream/411122
Nearby gene
LOC107986773(+2983) ;
Upstream sequence
TCTAGTAAAACAGATAGTATTTCTTTACAGCCTCATTAGTTTCTCCTATGTAAACTGACAGTGCAAGGCAATGTTCACTGCATCTAATGTTCAGATGCAG
Downstream sequence
cagaaaaccaaatactgcatgttctcacttataaatgggagctacatgatgggaacacatagacacaaaggggtaaacaacagacaccggggcctacctg
Reference
Takakuwa, T., et al. Identification of Epstein-Barr virus integrated sites in lymphoblastoid cell line (IB4). Virus Res,2005, 108(1-2): 133-138.
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