VISDB Viral Integration Site DataBase

VIS ID

TVIS42000805

Fusion event

EBV-MTURN integration

Validated

No

Detection method

WGS

Data source

Curated

Sample type

Disease

B-cell lymphoma (BL)

Quality evaluation

Normal

Reported year

2005

PubMed ID

Virus name

EBV

Reference genome

Start

1385

Orient

+

Integrated sequence

TCTGCATGTTATTACTGATTGTCGCTGGCATACTCTTCATTCTTGCTATCCTGACCGAATGGGGCAGTGGAAATAGAACATACGGTCCAGTTTTTATGTG| |CCTCGGTGGCCTGCTCACCATGGTAGCCGGCGCTGTGTGGCTGACGGTGATGTCTAACACGCTTTTGTCTGCCTGGATTCTTACAGCAGGATTCCTGATT

Chromosome

chr7

Cytoband

p14.3

Reference genome

Start

End

30202844/30163228 (Hg38)

Orient

+

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-let-7f-2-3p ; hsa-mir-1185-1-3p ; hsa-mir-1185-2-3p ; hsa-mir-1273a ; hsa-mir-1277-5p ; hsa-mir-2054 ; hsa-mir-4486 ; hsa-mir-4649-5p ; hsa-mir-490-3p ; hsa-mir-6729-5p ; hsa-mir-7851-3p ; hsa-mir-939-3p

Nearest miRNA

hsa-mir-1183/Upstream/482400; hsa-mir-10399/Downstream/126566;

Nearest TSS

Nearest CpG islands

None/Target, chr7-CpG: 39/Upstream/27388, chr7-CpG: 207/Downstream/121073

Upstream sequence

CATTGCCAGAGTTCATGGAGAGAAGTCAGACAGAGCCTCCCCTCTCCTTGCTCCTCTCCCAAAACAGGAGTCAGGAGAGAAGTCTCTCTCTCTCTCTTTC

Downstream sequence

TTAAGAGCCAGTTTCTTTCTCCAAATGAATGGGTCTCCATAGAGAGACCCATTAGATTCGATTAGATTTGAGTTTTGCTTTACAGGCACAGCATAAAGGC