VISDB Viral Integration Site DataBase

VIS ID

TVIS42000806

Fusion event

EBV-POU6F2 integration

Validated

No

Detection method

WGS

Data source

Curated

Sample type

Disease

B-cell lymphoma (BL)

Quality evaluation

Normal

Reported year

2005

PubMed ID

Virus name

EBV

Reference genome

Start

49571

Orient

+

Integrated sequence

CTGGTGCTCATGCACACCTTGGCGGGTCATCCGCCACCCCCGTCCAGCAGGCTCAGGCCGCCGCATCCGCTGGGACCGGGGCCTTGGCATCATCAGCGCC| |GTCCACGGCCGTAGCCCAGTCCGCGACCCCCTCTGTTTCTTCATCTATTAGCAGCCTCCGGGCCGCGACTTCGGGGGCGACTGCCGCCGCCTCCGCCGCC

Chromosome

chr7

Cytoband

p14.1

Reference genome

Start

End

39054247/39014647 (Hg38)

Orient

+

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-335-5p ; hsa-mir-505-5p ; hsa-mir-545-3p ; hsa-mir-3120-3p ; hsa-mir-7850-5p ; hsa-mir-3978 ; hsa-mir-6124 ; hsa-mir-3148 ; hsa-mir-548t-3p ; hsa-mir-548ap-3p ; hsa-mir-548aa

Nearest miRNA

hsa-mir-1183/Upstream/2095215; hsa-mir-10399/Downstream/4136248;

Nearest TSS

Nearest CpG islands

None/Target, chr7-CpG: 39/Upstream/38318, chr7-CpG: 58/Downstream/399269

Nearest cancer related gene

POU6F2(TSG, No orient, 0)

Upstream sequence

cctcccaagtagctaggactacaggcatgcaccaccacactcagctaatttttgtattttttgtagagatgaggtctcactgtgttgcctaggctggtct

Downstream sequence

CTTTTTTCTTTTGTCACCTCCACATGTTGCTATAGCTTAGACAGCTTAGACCTGGAAAGAAAATTGCAAGATTTTTTTTTTCCTGTTTTCTCCCCACCAG