Basic Information
VIS ID
TVIS42000808
Fusion event
EBV-COBL integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Cell line
Disease
B-cell lymphoma (BL)
Quality evaluation
Normal
Reported year
2005
PubMed ID
15681063
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
166791
Orient
-
Integrated sequence
GCTGGCTGGTGGGCATCGGAGTCGGTGGGCGGTCCTCCACGGGGACACGCTCCTTCTTGGCCTTGTTCTTTGACCTTTTGGACATTCTTCTGAAGGAACG| |GCGGAGAGTAGCGTAGAATCCAGCCAGTGGTCTACCCGGTCGCATGGTGGCTTCTTAGATGAGGAGCAGGCATAAAAGTCCAAACAGGACACAGAGTACC
Host Sequence
Chromosome
chr7
Cytoband
p12.1
Reference genome
GRCh37/hg19
Start
51262662/51194965 (Hg38)
End
51262662/51194965 (Hg38)
Orient
+
Location type
Intronic
Target gene
COBL
Nearest miRNA
hsa-mir-1183/Upstream/6313165; hsa-mir-10399/Downstream/5760820;
Nearest TSS
ENST00000635602/Upstream/1376; ENST00000414409/Downstream/121506;
Nearest CpG islands
None/Target, chr7-CpG: 39/Upstream/401024, chr7-CpG: 148/Downstream/120649
Upstream sequence
ataaacacttccttacccaagaaaaattagatataatatttaaaatgacaacccaccaaaaaagctgcacttgtgtgaataaacaaaaagtacatgaaga
Downstream sequence
ttatctgtttactctgttgatagtttcttttgctgtgcagaagctctgtagtttaattagattccatttgtcaggttttgcttttgttgcaattggtttc
Reference
Takakuwa, T., et al. Identification of Epstein-Barr virus integrated sites in lymphoblastoid cell line (IB4). Virus Res,2005, 108(1-2): 133-138.
Curate