Basic Information
VIS ID
TVIS42000809
Fusion event
EBV-LOC105375341 integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Cell line
Disease
B-cell lymphoma (BL)
Quality evaluation
Normal
Reported year
2005
PubMed ID
15681063
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
73112
Orient
-
Integrated sequence
ACGCCGCACGGTCCGGCACAGGTCATAGATTTCCTCCAGCGACCAGGGGGCCCCCTTGATCTTTAGATCCAGGTCCAAGACCAGGTTGCAGACCGGAAGC| |CGGGGATTAAAGTATTCATGCCGGGAGACAAAGAGCTGCTCGCTCAGGCTGTTCTGTGAATAGTACACTGGGGTGTAGGAGAGGGCCCTGGTGAGACACG
Host Sequence
Chromosome
chr7
Cytoband
q11.22
Reference genome
GRCh37/hg19
Start
67704255/68239268 (Hg38)
End
67704255/68239268 (Hg38)
Orient
+
Location type
Intronic
Fragile sites / regions
FRA7J
Target gene
LOC105375341
Nearest miRNA
hsa-mir-1183/Upstream/1124871; hsa-mir-10399/Downstream/3068404;
Nearest TSS
ENST00000635602/Upstream/148045; ENST00000447158/Downstream/48965;
Nearest CpG islands
None/Target, chr7-CpG: 39/Upstream/936224, chr7-CpG: 226/Downstream/1358120
Upstream sequence
TTACCCTTTAATAAAAATCTTTTCCATGTTTATGATTATTTTATTTTTTATCTTATAACGTAAATAATAAAATAACATCTTAATGATAACCAGAGCACTA
Downstream sequence
agctcagctcactgcaacctccacctactgggttcaagtgattctcttgcctcagcctcccgagtagctgggtctacaggtacacgccaccatgcccagc
Reference
Takakuwa, T., et al. Identification of Epstein-Barr virus integrated sites in lymphoblastoid cell line (IB4). Virus Res,2005, 108(1-2): 133-138.
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