Basic Information
VIS ID
TVIS42000811
Fusion event
EBV-chr7 integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Cell line
Disease
B-cell lymphoma (BL)
Quality evaluation
Normal
Reported year
2005
PubMed ID
15681063
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
133055
Orient
+
Integrated sequence
GCACGTCCTGCCCCCCCGTGCTGGGCAGTCAGGGCCTGGAAGTCTTGGCGGCGTTGGTATTTAAAAACCAGCGATCCCTGAGAACGCTCCAGGTAGAGTT| |TCCAGCCCTGGGCCAAAAGACCCTCCCCACCTCCACCACCGGCCTGCTAAACCTCCTCTCCCGCTGGCAGGATGGCGCTCTCCGGGCACGTCTTGATAGA
Host Sequence
Chromosome
chr7
Cytoband
q21.11
Reference genome
GRCh37/hg19
Start
77628410/77999093 (Hg38)
End
77628410/77999093 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-10525/Upstream/2083824; hsa-mir-10399/Downstream/14204922;
Nearest TSS
ENST00000635602/Upstream/8673; ENST00000428298/Downstream/35923;
Nearest CpG islands
None/Target, chr7-CpG: 39/Upstream/199560, chr7-CpG: 140/Downstream/20041
Nearby gene
LOC105375368(-2727) ;
Upstream sequence
tcagtgtcattaggtacattcacatggttgtgcaaatatcaccatcatccttccacagaatttttttcttgcaaaactgaaactctttttacccgttagt
Downstream sequence
aagattcgccaagatacaacacattctaggcataaaccataccttaacaatttcaaaagaataggagtcatacaaagaatgctgtcagaccacatggaat
Reference
Takakuwa, T., et al. Identification of Epstein-Barr virus integrated sites in lymphoblastoid cell line (IB4). Virus Res,2005, 108(1-2): 133-138.
Curate