Basic Information
VIS ID
TVIS42000817
Fusion event
EBV-chr7 integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Cell line
Disease
B-cell lymphoma (BL)
Quality evaluation
Normal
Reported year
2005
PubMed ID
15681063
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
85080
Orient
+
Integrated sequence
CCGGCCACCGGAAACAGCTGCCCCACGCCAGTGGCCAATGCCCCTGCGACCTATCCCTATGCGCCCCTTGCGGATGCAGCCAATCCCATTTAATCATCCA| |GTGGGACCCACTCCCCATCAGACACCTCAAGTGGAAATAACACCATATAAGCCCACTTGGGCTCAGATAGGGCACATTCCATATCAGCCTACACCAACGG
Host Sequence
Chromosome
chr7
Cytoband
q21.3
Reference genome
GRCh37/hg19
Start
93253868/93624556 (Hg38)
End
93253868/93624556 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-mir-10525/Upstream/140537; hsa-mir-10399/Downstream/92372;
Nearest TSS
ENST00000635602/Upstream/32983; ENST00000435257/Downstream/265614;
Nearest CpG islands
None/Target, chr7-CpG: 39/Upstream/49487, chr7-CpG: 70/Downstream/265498
Upstream sequence
CTCAAACTTCAAAGAGTACGTTGCTGCTTTGAGTCTTGTGTGACTAGTGATGAAAGCTATAGAGCAAGGATTTGAACTTCTCTGTGGGTGATGGAAGATT
Downstream sequence
ccacaatgtcatcgacacttagtattattcaactttattttatttgccagtctaggagaatgagatggtattttattgtggtttaatttacatttatatt
Reference
Takakuwa, T., et al. Identification of Epstein-Barr virus integrated sites in lymphoblastoid cell line (IB4). Virus Res,2005, 108(1-2): 133-138.
Curate