Basic Information
VIS ID
TVIS42000818
Fusion event
EBV-AP4M1 integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Cell line
Disease
B-cell lymphoma (BL)
Quality evaluation
Normal
Reported year
2005
PubMed ID
15681063
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
96709
Orient
+
Integrated sequence
GCAGGAGCAGGAGGGGCAGGAGCAGGAGGTGGAGGCCGGGGTCGAGGAGGCAGTGGAGGCCGGGGTCGAGGAGGTAGTGGAGGCCGGGGTCGAGGAGGTA| |GTGGAGGCCGCCGGGGTAGAGGACGTGAAAGAGCCAGGGGGGGAAGTCGTGAAAGAGCCAGGGGGAGAGGTCGTGGACGTGGAGAAAAGAGGCCCAGGAG
Host Sequence
Chromosome
chr7
Cytoband
q22.1
Reference genome
GRCh37/hg19
Start
99702859/100105236 (Hg38)
End
99702859/100105236 (Hg38)
Orient
-
Location type
Intronic
Fragile sites / regions
FRA7F
Target gene
AP4M1
Nearest miRNA
hsa-mir-10525/Upstream/11162; hsa-mir-10399/Downstream/51369;
Nearest TSS
ENST00000635602/Upstream/1668; ENST00000489387/Downstream/21;
Nearest CpG islands
None/Target, chr7-CpG: 39/Upstream/3213, chr7-CpG: 124/Downstream/21623
Upstream sequence
aaaactgggaattacaattcagcatgagatttgggtggggacaccaagccaaaccatatcaagatgaaagctcctttataagctactaaagaggcattct
Downstream sequence
CAGGTTATGGGCCAGGAATCCGGGTCGATGAAGTCTCGTTTCACAGCTCTGTGAATCTGGACGAATTTGAGTCTCATCGAATCCTCCGCTTGCAACCACC
Reference
Takakuwa, T., et al. Identification of Epstein-Barr virus integrated sites in lymphoblastoid cell line (IB4). Virus Res,2005, 108(1-2): 133-138.
Curate