Basic Information
VIS ID
TVIS42000820
Fusion event
EBV-chr7 integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Cell line
Disease
B-cell lymphoma (BL)
Quality evaluation
Normal
Reported year
2005
PubMed ID
15681063
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
140345
Orient
+
Integrated sequence
GAAAGGCACGTGCCCTTAGAAAACTTAGCTGCAAAAATTCTATTGTGTTGGGAGAGCCTCTATATCTAAAGGCCTTTCCTCACAATACAAATGTTACTAA| |CGTCTGCCCTCTGGAGACCTGCTATGTGGCTAGACGTATGGCCTACCCAAGACGTTGGGGGTCTCGGGTAGGCCATGATTCTTCCAGGCATAGGTTACAA
Host Sequence
Chromosome
chr7
Cytoband
q31.1
Reference genome
GRCh37/hg19
Start
107525702/107885257 (Hg38)
End
107525702/107885257 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-10525/Upstream/5413726; hsa-mir-10399/Downstream/6768088;
Nearest TSS
ENST00000635602/Upstream/82032; ENST00000485066/Downstream/5713;
Nearest CpG islands
None/Target, chr7-CpG: 39/Upstream/140681, chr7-CpG: 51/Downstream/5778
Nearby gene
DLD(+5850) ;
Upstream sequence
ATTGCCGAAGCTGGAAGAAAACCTGCGTAGTTCCGGGTGCCAGCTCCTGGTCTGGTAGAAAGTTATTCTGACAAGCCATGGTGTGCACCTATATGTGTTT
Downstream sequence
ctaattaatgtatctgaaatagtttccatcccttttccatctcctagttactagtgcttccttgcatcattcatcaaataaacttcttacattcaaattc
Reference
Takakuwa, T., et al. Identification of Epstein-Barr virus integrated sites in lymphoblastoid cell line (IB4). Virus Res,2005, 108(1-2): 133-138.
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