Basic Information
VIS ID
TVIS42000822
Fusion event
EBV-chr7 integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Cell line
Disease
B-cell lymphoma (BL)
Quality evaluation
Normal
Reported year
2005
PubMed ID
15681063
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
128662
Orient
+
Integrated sequence
ACATCAAGGTCAAGAAGGAAACTGGAATGTACACACTGGTCAAGCTTTATTACCTGCTGCGCATCTAAAGGAAAAACATAACAATCTTGTGAACCAGAAA| |GATACCCAGAGCAAAAGCAATAAAGTACAGGATTATTGCCAAAACAACGTGTGCTCTTTCTTCATACAGGCCCGCAATTTCCATGACAGTCCCGTTGGTG
Host Sequence
Chromosome
chr7
Cytoband
q31.1
Reference genome
GRCh37/hg19
Start
112383822/112743767 (Hg38)
End
112383822/112743767 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-10525/Upstream/10272236; hsa-mir-10399/Downstream/1909578;
Nearest TSS
ENST00000635602/Upstream/121389; ENST00000495516/Downstream/34889;
Nearest CpG islands
None/Target, chr7-CpG: 39/Upstream/292410, chr7-CpG: 62/Downstream/46158
Nearby gene
MIPEPP1(-5329) ;
Upstream sequence
gctttttagtttttgtgtatttgttgcatatttttgggttaccacgaggcttgcagatactattttataactcattactttaagctggtaacaacttaac
Downstream sequence
AAAACCACCACCaaaaaaaaaaaaaaaaaaaaaaaTCACAGGTACCTGGGTATTAAAATGGCCTGTTAAGGCAGGCAGCTCAGTGCGATTGGAATTCACT
Reference
Takakuwa, T., et al. Identification of Epstein-Barr virus integrated sites in lymphoblastoid cell line (IB4). Virus Res,2005, 108(1-2): 133-138.
Curate