Basic Information
VIS ID
TVIS42000825
Fusion event
EBV-chr7 integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Cell line
Disease
B-cell lymphoma (BL)
Quality evaluation
Normal
Reported year
2005
PubMed ID
15681063
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
42788
Orient
+
Integrated sequence
ATGAATCAGGGTCATTGGGCCTGCGGGGAACTGAGCCAGTAGGATATTAGGCAAGGGTGACACAGTGCCCATGCATTATAATTTAACCAAACAGTGGTCG| |TGAGTTTTAGGCCGGCCATGGGGGCTTACAAGAATAACATGCCAATGACCCGGCCCCCACTTTTAAATTCTGTTGCAGCAGATAGCTGATACCCAATGTT
Host Sequence
Chromosome
chr7
Cytoband
q31.32
Reference genome
GRCh37/hg19
Start
121452093/121812039 (Hg38)
End
121452093/121812039 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-10525/Upstream/4791720; hsa-mir-10399/Downstream/5246049;
Nearest TSS
ENST00000635602/Upstream/161679; ENST00000471837/Downstream/61050;
Nearest CpG islands
None/Target, chr7-CpG: 39/Upstream/415423, chr7-CpG: 72/Downstream/60953
Upstream sequence
atcaccatcaccatcatcatcatcatcatcatcatcatcaccatcatcatcatcatcatcatcatcatcaccaccaccatcaccaccatcaccatcacca
Downstream sequence
atgatgactccaggtgggaatcagcaaattcttagctgtggtggctatgggaggagactccttctgcttgagagaagcagagggaaaagtaaaggggact
Reference
Takakuwa, T., et al. Identification of Epstein-Barr virus integrated sites in lymphoblastoid cell line (IB4). Virus Res,2005, 108(1-2): 133-138.
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