VISDB Viral Integration Site DataBase

VIS ID

TVIS42000826

Fusion event

EBV-NDUFA5 integration

Validated

No

Detection method

WGS

Data source

Curated

Sample type

Disease

B-cell lymphoma (BL)

Quality evaluation

Normal

Reported year

2005

PubMed ID

Virus name

EBV

Reference genome

Start

54280

Orient

-

Integrated sequence

GCCTTGTCAGCAGCTGGGGCTTCTTAGGCCAGAGCGCCGAGTCCGAGGCCAGCCTGGGCGGGGCGGTTGCCTGGGGGATAGTTGGAGGAGGAGGCAGGTT| |AGCCTGGCCTGGGTCATTAGTGGCTTCGGGTAGCGTCCGATCCACGTACTCGCTCACGATGGCCGTCAGGGCAGCCTCGGCTGCTCGTCTTTTTTCCAGA

Chromosome

chr7

Cytoband

q31.32

Reference genome

Start

End

123179894/123539840 (Hg38)

Orient

+

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-26b-5p ; hsa-mir-1226-3p ; hsa-mir-92a-3p ; hsa-mir-6734-5p ; hsa-mir-6834-5p ; hsa-mir-6870-5p ; hsa-mir-7111-5p ; hsa-mir-5698 ; hsa-mir-4723-5p ; hsa-mir-6825-5p ; hsa-mir-3175 ; hsa-mir-6883-5p ; hsa-mir-6785-5p ; hsa-mir-4728-5p ; hsa-mir-149-3p ; hsa-mir-6878-5p ; hsa-mir-6133 ; hsa-mir-6130 ; hsa-mir-6129 ; hsa-mir-6127 ; hsa-mir-4419a ; hsa-mir-4510 ; hsa-mir-6875-5p ; hsa-mir-3126-5p ; hsa-mir-6794-5p ; hsa-mir-4716-3p ; hsa-mir-6760-5p ; hsa-mir-4779 ; hsa-mir-6891-5p ; hsa-mir-3173-3p ; hsa-mir-4789-5p ; hsa-mir-8485 ; hsa-mir-4801 ; hsa-mir-4731-3p ; hsa-mir-8064 ; hsa-mir-548as-3p

Nearest miRNA

hsa-mir-10525/Upstream/6519521; hsa-mir-10399/Downstream/3518248;

Nearest TSS

Nearest CpG islands

None/Target, chr7-CpG: 39/Upstream/4632, chr7-CpG: 21/Downstream/17766

Upstream sequence

gatggtggtgatgttggtgaggatagtgacagtggtgatgacggtggtgatggtgatggtggtgatggtgatggtggtgatggtgatggtggtgatggtg

Downstream sequence

TACAGATAATTTTGACAGAAAAGGTAAAGAGAGCAGGATCTAGTTTCATTTGGTACAGCCCATACAGCACAGGAAGAAGTCACAACATCCCAAGCATATT