VISDB Viral Integration Site DataBase

VIS ID

TVIS42000828

Fusion event

EBV-CHCHD3 integration

Validated

No

Detection method

WGS

Data source

Curated

Sample type

Disease

B-cell lymphoma (BL)

Quality evaluation

Normal

Reported year

2005

PubMed ID

Virus name

EBV

Reference genome

Start

64395

Orient

+

Integrated sequence

TTCTACGATGAGGAATTCTTCCAGATGCACCGGGATGAGCTGGAGACCCGAGTCTCTGCTTTCGCGCAGAGCCCGGCCTACGAGCGCATCGTCTCCAGCG| |GCTACCTGTCGGCCCTGCGCTACTATGACACCTATCTGTATGTGGGGCGCAGCGGGAAGCAGGAGAGTGTGCAGCACTTTTACATGCGGTTAGCCGGCTT

Chromosome

chr7

Cytoband

q33

Reference genome

Start

End

132590214/132905454 (Hg38)

Orient

-

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-423-3p ; hsa-mir-6885-3p ; hsa-mir-5006-3p ; hsa-mir-4755-5p ; hsa-mir-4439 ; hsa-mir-3977 ; hsa-mir-3136-5p ; hsa-mir-211-5p ; hsa-mir-204-5p ; hsa-mir-623 ; hsa-mir-2115-5p ; hsa-mir-6857-3p ; hsa-mir-4513 ; hsa-mir-6855-3p ; hsa-mir-6769b-3p ; hsa-mir-4723-3p ; hsa-mir-3183 ; hsa-mir-3938 ; hsa-mir-6800-3p ; hsa-mir-519e-5p ; hsa-mir-515-5p ; hsa-mir-5581-3p ; hsa-mir-136-5p ; hsa-mir-4277 ; hsa-mir-584-3p ; hsa-mir-520h ; hsa-mir-520g-3p ; hsa-mir-3973 ; hsa-mir-148a-5p

Nearest miRNA

hsa-mir-10525/Upstream/2027915; hsa-mir-10399/Downstream/129406;

Nearest TSS

Nearest CpG islands

None/Target, chr7-CpG: 39/Upstream/327686, chr7-CpG: 54/Downstream/176295

Upstream sequence

ctaccaccatctcctccaccaccaccaccaccaccaccaccattatctccttcatcaccactacccccaccactaccaccatcacctcctccaccatcac

Downstream sequence

gtcgggagggagagcatcaggaatactagctaatggatgctgggcttaacacctaggtgatgggatgacctgtgcacatgtttacctacgtaacaaacct