Basic Information
VIS ID
TVIS42000829
Fusion event
EBV-chr7 integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Cell line
Disease
B-cell lymphoma (BL)
Quality evaluation
Normal
Reported year
2005
PubMed ID
15681063
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
66721
Orient
+
Integrated sequence
TGTTGTACGTGCGTGATCATGAGGGCTTTGCCTGCCTAACGGTCGAAACCCACCGCAACCGCTGGTTCGCGGCTCACATTGTCCTCACCAAGGACTGCGG| |GTGTCTCAAGCTACTCAATGAGAGGGACTTGGAGTTTTACAAGTTCCTCTTTACGTTCCTGGCCATGGCCGAGAAGCTTGTGAACTTTAACATTGATGAA
Host Sequence
Chromosome
chr7
Cytoband
q33
Reference genome
GRCh37/hg19
Start
134945823/135261071 (Hg38)
End
134945823/135261071 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-10525/Upstream/53993; hsa-mir-10399/Downstream/1642096;
Nearest TSS
ENST00000635602/Upstream/29092; ENST00000489493/Downstream/126816;
Nearest CpG islands
None/Target, chr7-CpG: 39/Upstream/14313, chr7-CpG: 54/Downstream/248748
Nearby gene
STRA8(-2410) ; LOC107984123(+1456) ;
Upstream sequence
ATATAACACACACACATATAACTTTTAAATCTTACATAAAGTccaggcactatctagacactagaaatacaacagtgaataaaacaaacaaaattgccac
Downstream sequence
AGGCCGTGGCTCTAGGCACTGCATTATCAGAACAGGGGATTCAGATTCTGATAGCGACCTTGGAATGTGCAGAAAAAGCTCCAACAGATAAATGCTTATT
Reference
Takakuwa, T., et al. Identification of Epstein-Barr virus integrated sites in lymphoblastoid cell line (IB4). Virus Res,2005, 108(1-2): 133-138.
Curate