Basic Information
VIS ID
TVIS42000830
Fusion event
EBV-WEE2-AS1 integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Cell line
Disease
B-cell lymphoma (BL)
Quality evaluation
Normal
Reported year
2005
PubMed ID
15681063
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
122687
Orient
-
Integrated sequence
GTCCCATTCTCCAAATTGTCGAGGATGTCCTCGTCCCTGGTAAAATGGTGGCTGAAGGCTGGCCCGTTGTAGGCCAGGGTCTGGGCCACGTGCTGAAAGT| |CCACCCCGAGGCCGCACATGTGGGCATTGGTGCAGGTTGGGAGGAAAACGTAGTAAAAGATCTTTTCCAGCACATCCGCATGCCCCTCATCTACATAAGG
Host Sequence
Chromosome
chr7
Cytoband
q34
Reference genome
GRCh37/hg19
Start
141414650/141714850 (Hg38)
End
141414650/141714850 (Hg38)
Orient
+
Location type
Intronic
Target gene
WEE2-AS1
Nearest miRNA
hsa-mir-10399/Upstream/2670693; hsa-mir-11400/Downstream/759677;
Nearest TSS
ENST00000635602/Upstream/6497; ENST00000493845/Downstream/4312;
Nearest CpG islands
None/Target, chr7-CpG: 39/Upstream/12443, chr7-CpG: 34/Downstream/23354
Upstream sequence
gagagagaaggagatgactggagaatagaatgcttgcaattgatcactgatgagatgcaggtgatggtaatgacaaagtcagggtgttatatgggagtgg
Downstream sequence
GGCTGAAGCAAAAAAGCATTGCTTTCAGAGCTGCTAAAGAATAGAAAGCCAAACTGTACTATTCCATAAAGGGCCCTGAATGACAGAAATCATCCAAATA
Reference
Takakuwa, T., et al. Identification of Epstein-Barr virus integrated sites in lymphoblastoid cell line (IB4). Virus Res,2005, 108(1-2): 133-138.
Curate