Basic Information
VIS ID
TVIS42000831
Fusion event
EBV-LOC105375551 integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Cell line
Disease
B-cell lymphoma (BL)
Quality evaluation
Normal
Reported year
2005
PubMed ID
15681063
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
65719
Orient
+
Integrated sequence
CGGACCTGGGCTGGCAGTACACTGACCCTCCCTCTCGCTCGTTAAACAAGGAAATATTCGAACATATGTACTTTACGGCCCTCTGCACCAGTAGTCTGAT| |TGGACTTCACACCAGGAAGATTTTTCCGGGTTTCAAACAGAGCAAGTATGCCGGGGGGTGGTTTCACTGGCACGATTGGGCAGGAACAGACCTTTCTATT
Host Sequence
Chromosome
chr7
Cytoband
q35
Reference genome
GRCh37/hg19
Start
144823123/145126030 (Hg38)
End
144823123/145126030 (Hg38)
Orient
+
Location type
Intronic
Target gene
LOC105375551
Nearest miRNA
hsa-mir-10399/Upstream/1743230; hsa-mir-153-2/Downstream/2251987;
Nearest TSS
ENST00000635602/Upstream/289635; ENST00000637105/Downstream/555339;
Nearest CpG islands
None/Target, chr7-CpG: 39/Upstream/289870, chr7-CpG: 70/Downstream/990152
Upstream sequence
gtggagctggtgatgatggaggtggaggtgttagtggtggtgacgctggtggtggtggaggtggtggtagaggtggtgatggtggttatggtgatggtgg
Downstream sequence
ggccttcacaccttttaattactgatcaacacattcagcttcttgttattcttttcaaaagcatcaataatgcttagcggcagccacttaattccattgt
Reference
Takakuwa, T., et al. Identification of Epstein-Barr virus integrated sites in lymphoblastoid cell line (IB4). Virus Res,2005, 108(1-2): 133-138.
Curate