Basic Information
VIS ID
TVIS42000832
Fusion event
EBV-chr7 integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Cell line
Disease
B-cell lymphoma (BL)
Quality evaluation
Normal
Reported year
2005
PubMed ID
15681063
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
152137
Orient
-
Integrated sequence
CGATCAGGACTGCCGCCAGTAGGTAGCAGCCGGCTTTCAGTCCTTGGACGGCCGTGTGCATGCCTTTGGTGGGGCCTTCCCTGCACATGTTGGGGCCTCT| |GTTGAGATTGGCGTCGGGGCCCATGGTAATGAGGAGGATGATAATCAGCAGGAGTACCAGACAAAACACGCCCATCAGGTACAGGCACACATTTCTGTGG
Host Sequence
Chromosome
chr7
Cytoband
q35
Reference genome
GRCh37/hg19
Start
145507763/145810670 (Hg38)
End
145507763/145810670 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-10399/Upstream/2427870; hsa-mir-153-2/Downstream/1567347;
Nearest TSS
ENST00000635602/Upstream/129301; ENST00000637105/Downstream/305332;
Nearest CpG islands
None/Target, chr7-CpG: 39/Upstream/974510, chr7-CpG: 70/Downstream/305512
Upstream sequence
gtggagctggtgatgatggaggtggaggtgttagtggtggtgacgctggtggtggtggaggtggtggtagaggtggtgatggtggttatggtgatggtgg
Downstream sequence
ttgggactctaaaagagaccccttctctaccctgaaggagagaaggggagatgaaagagtaaagaggtctttgtgttgcatctttgatactaggtcagtc
Reference
Takakuwa, T., et al. Identification of Epstein-Barr virus integrated sites in lymphoblastoid cell line (IB4). Virus Res,2005, 108(1-2): 133-138.
Curate