Basic Information
VIS ID
TVIS42000833
Fusion event
EBV-chr7 integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Cell line
Disease
B-cell lymphoma (BL)
Quality evaluation
Normal
Reported year
2005
PubMed ID
15681063
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
77157
Orient
+
Integrated sequence
ACGCCACCCGACGTGCCCGCTCCCGCTCCCGGGGACGTGAAGCAAAGAAAGTGCAAATTTCTGATTAATAAATTTTTATTGACTTTATACATAGGTCTCG| |GCGTCATCATATGGTGGGGTGGTGTAGGTATGGGATGTAGACAAGTTACGCCTAAAGGCGCAGTCCGCCATGACCAGCAGCAGCAGAAGGGTCAGCACAG
Host Sequence
Chromosome
chr7
Cytoband
q36.1
Reference genome
GRCh37/hg19
Start
148183269/148486177 (Hg38)
End
148183269/148486177 (Hg38)
Orient
+
Location type
Intergenic
Fragile sites / regions
FRA7I
Nearest miRNA
hsa-mir-10399/Upstream/1108056; hsa-mir-153-2/Downstream/2752244;
Nearest TSS
ENST00000635602/Upstream/71429; ENST00000307003/Downstream/17281;
Nearest CpG islands
None/Target, chr7-CpG: 39/Upstream/146421, chr7-CpG: 200/Downstream/212161
Upstream sequence
CAAACTATCACACTGTGTGGCAGGGCACATCACCAACAACGTCAAGGTAGAAAGGAGGCTTTTTCCCTCAGAGGgtgtgtgtgtgtgtgtgtgtgtgtgt
Downstream sequence
GGATAAGAGCACTGGGGGACCCCCATCCACACACTAAAGGAGGTTTAAGAAACTCAGGCCATGAACGGCTAAAGCACAGGGCTTGGTTTCAGAGAGCCAG
Reference
Takakuwa, T., et al. Identification of Epstein-Barr virus integrated sites in lymphoblastoid cell line (IB4). Virus Res,2005, 108(1-2): 133-138.
Curate