Basic Information
VIS ID
TVIS42000835
Fusion event
EBV-chr7 integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Cell line
Disease
B-cell lymphoma (BL)
Quality evaluation
Normal
Reported year
2005
PubMed ID
15681063
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
80972
Orient
+
Integrated sequence
GGAATTCCTAGGATTTTTGCAGAGAACGGATTTGTCCTATATCAAGAGCTTTGTCAGCGATGCCCTGGGCACCACTAGTATCCAAACACCGTGGATCGAT| |GACAATCCTAGCACGGAGACGGCACAGGCTTGGAATGCCGGCTTTCTCCGGGGTCGTGCGTATGGGATAGACTTGCTTAGAACTGAAGGGGAACATGTCG
Host Sequence
Chromosome
chr7
Cytoband
q36.3
Reference genome
GRCh37/hg19
Start
156037452/156244758 (Hg38)
End
156037452/156244758 (Hg38)
Orient
+
Location type
Intergenic
Fragile sites / regions
FRA7I
Nearest miRNA
hsa-mir-10399/Upstream/4811119; hsa-mir-153-2/Downstream/1329578;
Nearest TSS
ENST00000635602/Upstream/282126; ENST00000625073/Downstream/191075;
Nearest CpG islands
None/Target, chr7-CpG: 39/Upstream/88798, chr7-CpG: 15/Downstream/73783
Upstream sequence
AAAAGAATATAATGCAGTTTAAAAACATGAAACTACAGATAAGTTACTGATTTAAAAATTTGTCTTTTCTTTCTATTATCAAAAACTTTGAAAAGTATTT
Downstream sequence
actttttgcataaacaaacaaaatgaaaactaataaaaactctaagccttgagttcgtccccccacattttaactttttgttgtttctatttatatctta
Reference
Takakuwa, T., et al. Identification of Epstein-Barr virus integrated sites in lymphoblastoid cell line (IB4). Virus Res,2005, 108(1-2): 133-138.
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