Basic Information
VIS ID
TVIS42000839
Fusion event
EBV-chr8 integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Cell line
Disease
B-cell lymphoma (BL)
Quality evaluation
Normal
Reported year
2005
PubMed ID
15681063
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
115429
Orient
+
Integrated sequence
TCCCTGCTCGGCCTCCGCCGCCTTCCCCACCGGCGCTGCCCCGGATGTTGCTGGGGTTCTCGAGGGCTGGGTGGTGCTTGGACACAGAGGTCTCAGCAGC| |CGCCTTGGTCTCGGCCCCGGCCCTAAGTCTGAGCCCCAGGCAAAGGGCCGGACTCCCAGCGTGGCCCAACCTCTGCTCCCCTCTATTCTCCTCTTGCGTT
Host Sequence
Chromosome
chr8
Cytoband
p21.3
Reference genome
GRCh37/hg19
Start
21748454/21890943 (Hg38)
End
21748454/21890943 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-124-1/Upstream/4209286; hsa-mir-10400/Downstream/354023;
Nearest TSS
ENST00000518652/Upstream/78586; ENST00000520754/Downstream/20132;
Nearest CpG islands
None/Target, chr8-CpG: 109/Upstream/100610, chr8-CpG: 35/Downstream/21240
Nearby gene
LOC107986923(-3083) ;
Upstream sequence
GCAAACAGAAAGGAGTAAAAAATATTGTAGCCAATGTTAACTAAGAATTCCTAGCATTATACTGTTATTATGACAACATCATTTCTATAAATTTGAAACT
Downstream sequence
gtgcttatatacatttaagagctatttgtatttccttACCCTAAATGTACTTTGCTAGCCGTttatctcctttatcttcgcaatcccccagtgagaaatg
Reference
Takakuwa, T., et al. Identification of Epstein-Barr virus integrated sites in lymphoblastoid cell line (IB4). Virus Res,2005, 108(1-2): 133-138.
Curate