Basic Information
VIS ID
TVIS42000841
Fusion event
EBV-LOC107984124 integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Cell line
Disease
B-cell lymphoma (BL)
Quality evaluation
Normal
Reported year
2005
PubMed ID
15681063
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
7229
Orient
+
Integrated sequence
TGTGGCTAGTTTTGCACCCACAACATGTAAGGGCCCGCTACCCCTACAACACAAAACAAACTATCTCCCCTAACCATCCTTTTGCCAATCAATTCTGTGA| |CAGGGTTTCCTGGACACCCAGTCTTAGTTCAGGTAGACACCCAGTTATGCAGTGCCACCAATTCCAACCATTTTTAAACCTCCTGGAATTCTATCATTAA
Host Sequence
Chromosome
chr8
Cytoband
p21.3
Reference genome
GRCh37/hg19
Start
22839268/22981755 (Hg38)
End
22839268/22981755 (Hg38)
Orient
+
Location type
Intronic
Target gene
LOC107984124
Nearest miRNA
hsa-mir-124-1/Upstream/736718; hsa-mir-10400/Downstream/1972041;
Nearest TSS
ENST00000518652/Upstream/40419; ENST00000518534/Downstream/5662;
Nearest CpG islands
None/Target, chr8-CpG: 109/Upstream/115716, chr8-CpG: 82/Downstream/17532
Upstream sequence
cttaaattttggaacttattattggtctgttcaggttttcactttcttcttggttcaatactgggagggtgtgtgttgacaggaatttatccatttcctc
Downstream sequence
TGAGCAATAGGCCCACTCCTGGCTGGCATACTCTTACAGCAAAGTGCCAGCTTTTCCAGACGAGTTTAGGGTCTCAGCCTGGCCCTGAGCCCAGTCAGCT
Reference
Takakuwa, T., et al. Identification of Epstein-Barr virus integrated sites in lymphoblastoid cell line (IB4). Virus Res,2005, 108(1-2): 133-138.
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