Basic Information
VIS ID
TVIS42000842
Fusion event
EBV-LOC101929294 integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Cell line
Disease
B-cell lymphoma (BL)
Quality evaluation
Normal
Reported year
2005
PubMed ID
15681063
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
7463
Orient
+
Integrated sequence
CACGCCCCCTTGGGAGGTGGCGGCATATGCAAAGGATAGCACTCCCACTCTACTACTGGGTATCATATGCTGACTGTATATGCATGAGGATAGCATATGC| |TACCCGGATACAGATTAGGATAGCATATACTACCCAGATATAGATTAGGATAGCATATGCTACCCAGATATAGATTAGGATAGCCTATGCTACCCAGATA
Host Sequence
Chromosome
chr8
Cytoband
p21.2
Reference genome
GRCh37/hg19
Start
24233060/24375547 (Hg38)
End
24233060/24375547 (Hg38)
Orient
+
Location type
Intronic
Target gene
LOC101929294
Nearest miRNA
hsa-mir-124-1/Upstream/2130510; hsa-mir-10400/Downstream/578249;
Nearest TSS
ENST00000518652/Upstream/28599; ENST00000520193/Downstream/8738;
Nearest CpG islands
None/Target, chr8-CpG: 109/Upstream/648299, chr8-CpG: 165/Downstream/537842
Upstream sequence
ACATTCTGCTGGTGTTTGGTGTGATTGGTGCACCCCTGTTGTTAGCCAGcttcttccagaggagtcataatggacattagcatattaaaggctATTAAAC
Downstream sequence
aactaaaacattcttgaaaagggagaataaagtgagaagcatcagttcacttgattttaagacatattatacatatatacagtaatctagttgtaatgta
Reference
Takakuwa, T., et al. Identification of Epstein-Barr virus integrated sites in lymphoblastoid cell line (IB4). Virus Res,2005, 108(1-2): 133-138.
Curate