Basic Information
VIS ID
TVIS42000843
Fusion event
EBV-chr8 integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Cell line
Disease
B-cell lymphoma (BL)
Quality evaluation
Normal
Reported year
2005
PubMed ID
15681063
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
135230
Orient
+
Integrated sequence
AGGACACCCACCACCAGGCGGTTAGGGAGGACACTGCCAAGGTTGAAGAGCAGATTTCCGTCAGCCAGGGTGACCTGGCTCAGGTCCGGCGCCCTGCGCA| |GTCCAAGCTGCGCCCACACACATGCACAGACGGCCCCTGTGACATCAGGCCGGTCATGCAAAAACAGACAAAGAGACCGTGAGCGGTTACCGGGGCGCAG
Host Sequence
Chromosome
chr8
Cytoband
p21.2
Reference genome
GRCh37/hg19
Start
26990754/27133237 (Hg38)
End
26990754/27133237 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-mir-124-1/Upstream/84274; hsa-mir-10400/Downstream/300133;
Nearest TSS
ENST00000518652/Upstream/47161; ENST00000521408/Downstream/51084;
Nearest CpG islands
None/Target, chr8-CpG: 109/Upstream/266188, chr8-CpG: 40/Downstream/154377
Upstream sequence
TTCTGGGAGCTTTTTTACTGATATCTTTCAAGCCTTTAATGAATATTAATTTACATAATTGCCTTATGTCCATTAGGGGGAACATCATCTCATTAAAATG
Downstream sequence
cccttttcttttttctgccttcctgccttgaatatttttgagaatttcatttttatttgtctatagttttttgagtgtatctctttgtatagatttttag
Reference
Takakuwa, T., et al. Identification of Epstein-Barr virus integrated sites in lymphoblastoid cell line (IB4). Virus Res,2005, 108(1-2): 133-138.
Curate