Basic Information
VIS ID
TVIS42000844
Fusion event
EBV-chr8 integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Cell line
Disease
B-cell lymphoma (BL)
Quality evaluation
Normal
Reported year
2005
PubMed ID
15681063
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
1138
Orient
+
Integrated sequence
TTGCTCTTCGTGCTCTTCATGTCCACTGAGCAAGATCCTTCTGGCACGACTGTTCCTATATGCTCTCGCACTCTTGTTGCTAGCCTCCGCGCTAATCGCT| |GGTGGCAGTATTTTGCAAACAAACTTCAAGAGTTTAAGCAGCACTGAATTTATACCCAGTGAGTATCTATTTGTTACTCCTGTTTAGTTGAAGAAAACAA
Host Sequence
Chromosome
chr8
Cytoband
p12
Reference genome
GRCh37/hg19
Start
34517339/34659821 (Hg38)
End
34517339/34659821 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-124-1/Upstream/4702473; hsa-mir-10400/Downstream/6611227;
Nearest TSS
ENST00000518652/Upstream/410875; ENST00000519189/Downstream/124231;
Nearest CpG islands
None/Target, chr8-CpG: 109/Upstream/936739, chr8-CpG: 103/Downstream/575340
Upstream sequence
GAAAAGCTCCAGGCAGACAGAGAAGATCAGGAGAAAGATCTCTAGCTGCTGCTTAGATGGCAAGGTGGCAAACCTTACAGGTGCCAGATCTGTGTACGGA
Downstream sequence
TATCCATCTTTGCAATGCATCCTCGAACTTACTCATAGAATGCCACTTCCAGGCAGACCCGGGATTTTCTCCCTTGGAACTCCACCTTAACTTATGGAAT
Reference
Takakuwa, T., et al. Identification of Epstein-Barr virus integrated sites in lymphoblastoid cell line (IB4). Virus Res,2005, 108(1-2): 133-138.
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