Basic Information
VIS ID
TVIS42000845
Fusion event
EBV-chr8 integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Cell line
Disease
B-cell lymphoma (BL)
Quality evaluation
Normal
Reported year
2005
PubMed ID
15681063
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
50281
Orient
-
Integrated sequence
TATCCTTACATTTTGGCATTTTGGGCAGCTGGGAGGCGGCGGATGGGGGTGCTTCTTTTCGCACGGTGTATGTTTGGGGACCCGCATGCCGGTACTGGGA| |TAGGCGCACCTCGGGCCGCGCGCCAGGCTCCGAGCCGGAATGCATTGGGGGCAATGGGATTGCGGGGGATTGTTGCTGTCTGCTCCTGACAGGGAGAGAC
Host Sequence
Chromosome
chr8
Cytoband
p11.21
Reference genome
GRCh37/hg19
Start
40834906/40977387 (Hg38)
End
40834906/40977387 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-124-1/Upstream/11020039; hsa-mir-10400/Downstream/293661;
Nearest TSS
ENST00000518652/Upstream/75533; ENST00000521725/Downstream/329603;
Nearest CpG islands
None/Target, chr8-CpG: 109/Upstream/79502, chr8-CpG: 148/Downstream/330946
Upstream sequence
attgttttagtctttggctgttacaaataatactgcagtaacttttgtttatttatgacctcctttatttatattctgtgagtatatctgtagaacaaat
Downstream sequence
CAAATTCCAGGTGTATTTCCTGGGACTCAAGCCACATATCCAAGGATTCTCAAACCTGTGAGTGGATTGAGAGCAAACCTCAGGTGGCACATATTCCATT
Reference
Takakuwa, T., et al. Identification of Epstein-Barr virus integrated sites in lymphoblastoid cell line (IB4). Virus Res,2005, 108(1-2): 133-138.
Curate