Basic Information
VIS ID
TVIS42000847
Fusion event
EBV-chr8 integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Cell line
Disease
B-cell lymphoma (BL)
Quality evaluation
Normal
Reported year
2005
PubMed ID
15681063
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
76804
Orient
+
Integrated sequence
CGCCCGCCTGGCTCGCCTGGAGTCTGAGAATAAGGCTCTGAAGCAACAGGTCCTCAGAGGGGGTGCCTGTGCCTCGTCTACCTCTGTTCCTTCTGCTCCA| |GTGCCTCCGCCTGAGCCGCTTACAGCTCGACAGCGAGAGGTAATGATTACGCAGGCCACGGGCCGTTTGGCGTCTCAGGCTATGAAGAAGATTGAAGACA
Host Sequence
Chromosome
chr8
Cytoband
p11.1
Reference genome
GRCh37/hg19
Start
43721074/43865931 (Hg38)
End
43721074/43865931 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-124-1/Upstream/969656; hsa-mir-10400/Downstream/17848857;
Nearest TSS
ENST00000518652/Upstream/669763; ENST00000518278/Downstream/2956306;
Nearest CpG islands
None/Target, chr8-CpG: 109/Upstream/588596, chr8-CpG: 41/Downstream/2751436
Upstream sequence
AAAATAGAGGTAAGAGTAAACAGTGGTGTTAGAAGCCAAGAAAATATAGCTGTAAAAGAAGAGTACGTGTGTGGGGAGAAGTAGCATATTGTGTGCCCAt
Downstream sequence
ttttgttctcattggtttcaaagaacatatttatttctgccttcatttcgttatgtgcccagtagtcattcaggagcaggttgttcagtttccatgtagt
Reference
Takakuwa, T., et al. Identification of Epstein-Barr virus integrated sites in lymphoblastoid cell line (IB4). Virus Res,2005, 108(1-2): 133-138.
Curate