Basic Information
VIS ID
TVIS42000848
Fusion event
EBV-chr8 integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Cell line
Disease
B-cell lymphoma (BL)
Quality evaluation
Normal
Reported year
2005
PubMed ID
15681063
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
45784
Orient
-
Integrated sequence
AGGACACAGGGAGGAAGCACCGGCAAATGTAAAAGTGAAGCTGGATGTCAATGGCAAGAATCCTGGAGGGCATGAAGAGGGAATCCAACCCCCCGGCCAT| |GGGGAAGTATTTTATCAGGATGTGTAAAAAGTCCATGCCTGTGATGAGGCTAGAGATCCAGGCTCGTGGGGCATTTAGACAGTAGTAGCAGAGCAGGGCA
Host Sequence
Chromosome
chr8
Cytoband
q11.1
Reference genome
GRCh37/hg19
Start
48053981/47142358 (Hg38)
End
48053981/47142358 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-124-1/Upstream/4246083; hsa-mir-10400/Downstream/14572430;
Nearest TSS
ENST00000518652/Upstream/207912; ENST00000528139/Downstream/48414;
Nearest CpG islands
None/Target, chr8-CpG: 109/Upstream/9184, chr8-CpG: 21/Downstream/37711
Nearby gene
LOC107986885(-9339) ;
Upstream sequence
AGCCCAAAGTCTATGTGAAAACTTTAACCTATTTATAATTCTAGTTGTTCAAATTCAGTTTGTTCAAGAACAATAATTTCATTATTTTTTCAGTAGTTTG
Downstream sequence
GCATCTTGTGATCTCAGCCTCCTGGATCAGTCATTGTCTAGCTTTGATCATAACCATGAGAAACTGGAGCAGAAGATGAATGTGGAGAATGCTCTGGCTT
Reference
Takakuwa, T., et al. Identification of Epstein-Barr virus integrated sites in lymphoblastoid cell line (IB4). Virus Res,2005, 108(1-2): 133-138.
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