VISDB Viral Integration Site DataBase

VIS ID

TVIS42000850

Fusion event

EBV-SNTG1 integration

Validated

No

Detection method

WGS

Data source

Curated

Sample type

Disease

B-cell lymphoma (BL)

Quality evaluation

Normal

Reported year

2005

PubMed ID

Virus name

EBV

Reference genome

Start

70

Orient

-

Integrated sequence

AGAATTCGTCTTGCTCTATTCACCCTTACTTTTCTTCTTGCCCGTTCTCTTTCTTAGTATGAATCCAGTA| |TGCCTGCCTGTAATTGTTGCGCCCTACCTCTTTTGGCTGGCGGCTATTGCCGCCTCGTGTTTCACGGCCTCAGTTAGTACCGTTGTGACCGCCACCGGCT

Chromosome

chr8

Cytoband

q11.21

Reference genome

Start

End

51075269/50162709 (Hg38)

Orient

+

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-2681-5p ; hsa-mir-548c-3p ; hsa-mir-7977 ; hsa-mir-23c ; hsa-mir-23b-3p ; hsa-mir-23a-3p ; hsa-mir-130a-5p ; hsa-mir-3671 ; hsa-mir-6849-3p ; hsa-mir-513c-3p ; hsa-mir-513a-3p ; hsa-mir-3606-3p

Nearest miRNA

hsa-mir-124-1/Upstream/7266434; hsa-mir-10400/Downstream/11552079;

Nearest TSS

Nearest CpG islands

None/Target, chr8-CpG: 109/Upstream/252409, chr8-CpG: 98/Downstream/1245893

Upstream sequence

CAGGAACTCAGCTTCCTATGGGTCTGAGTGCATTCCTTTCCCCAAGCAGCTAACATTTTCAGACAACTCTTCGAAGGATCTGGCATGTACATTAAATGTT

Downstream sequence

GTCACATGTGTGAAGCTGAGTCCTCTGTCCTGATTGACATCAGCCTGGCCATTCCTCATGATTATGCAGTGACGTGTTCTGCTCCTGCCATCTGCTCCCA