Basic Information
VIS ID
TVIS42000851
Fusion event
EBV-LOC107986945 integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Cell line
Disease
B-cell lymphoma (BL)
Quality evaluation
Normal
Reported year
2005
PubMed ID
15681063
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
81710
Orient
-
Integrated sequence
GGCCTTTGCACCCGTTAGACCACAACACATGCCAGTAGAACCCGTCCCTGTCCCGACAGTGGCACTTGAGCGACCAGTTTACCCCAAGCCAGTTCGTCCG| |GCACCTCCTAAGATTGCTATGCAGGGCCCCGGGGAAACTTCTGGCATTAGACGCGCGCGGGAGCGTTGGAGGCCCGCACCTTGGACGCCAAATCCACCCC
Host Sequence
Chromosome
chr8
Cytoband
q12.1
Reference genome
GRCh37/hg19
Start
59156317/58243758 (Hg38)
End
59156317/58243758 (Hg38)
Orient
+
Location type
Intronic
Target gene
LOC107986945
Nearest miRNA
hsa-mir-124-1/Upstream/15347483; hsa-mir-10400/Downstream/3471030;
Nearest TSS
ENST00000518652/Upstream/137464; ENST00000638450/Downstream/167506;
Nearest CpG islands
None/Target, chr8-CpG: 109/Upstream/96903, chr8-CpG: 53/Downstream/167489
Upstream sequence
TTCCCTCTCTGTAGACTGCTCTATAACATCTTCTTCCTGGTAGACTTCCTCTTGTAACCCCATGGTTCAGTAGGTAGCCCTGTGGAGCAAGTTATTTTAA
Downstream sequence
TTCACGGCATTGCAAGAGAATCCCAGGGACCTTACTTAGCCATGCCAACTTGCTATTAAAAATTGAATCCCATTCTATTCAATTGGCACAAAAATCAAGC
Reference
Takakuwa, T., et al. Identification of Epstein-Barr virus integrated sites in lymphoblastoid cell line (IB4). Virus Res,2005, 108(1-2): 133-138.
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