Basic Information
VIS ID
TVIS42000852
Fusion event
EBV-chr8 integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Cell line
Disease
B-cell lymphoma (BL)
Quality evaluation
Normal
Reported year
2005
PubMed ID
15681063
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
46772
Orient
+
Integrated sequence
GGTCTCTGGAAGTGGAGAGATGCTCCGGGGCGCATGTGTTCTCCAGGGGCAGCTCCCAACCCCTCTGCACCGTGAAGCTGCGCCACGGACAGATTTACCA| |CCTGGAGTTTGTCTACAAGTTCCTGGCCTTTAAGCTGAAGAACTGCAACTACCCCTCCTCGCCCGTGTTTGTGATATCCAACAACGGCCTGGCCACCACC
Host Sequence
Chromosome
chr8
Cytoband
q12.1
Reference genome
GRCh37/hg19
Start
60688076/59775517 (Hg38)
End
60688076/59775517 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-124-1/Upstream/16879242; hsa-mir-10400/Downstream/1939271;
Nearest TSS
ENST00000518652/Upstream/174113; ENST00000531077/Downstream/274070;
Nearest CpG islands
None/Target, chr8-CpG: 109/Upstream/655330, chr8-CpG: 14/Downstream/398049
Upstream sequence
attcaccaaaatttaataagtgcttagtatgtgccagacactgaactaagcAAAAAAAAAAAGCTATAAATAATTCATTCTTCCTATAGGAGTAGGAACA
Downstream sequence
GCTATAGGTGTGTTTTCTATTTTCTTCCATTCTCAGAAGCTAGTGACTCCATTATTATTGAGAAATAAATACTGGGAAGCAATTATGTATAGAAATCATA
Reference
Takakuwa, T., et al. Identification of Epstein-Barr virus integrated sites in lymphoblastoid cell line (IB4). Virus Res,2005, 108(1-2): 133-138.
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