VISDB Viral Integration Site DataBase

VIS ID

TVIS42000855

Fusion event

EBV-chr8 integration

Validated

No

Detection method

WGS

Data source

Curated

Sample type

Disease

B-cell lymphoma (BL)

Quality evaluation

Normal

Reported year

2005

PubMed ID

Virus name

EBV

Reference genome

Start

5284

Orient

-

Integrated sequence

TCCACCCGCCCCTGGCGTGGAAGTTAATGTCCAGAGATCACCTCTGATTCTGGCCCCCAACGCCTCTGGCATGTTTGAGTCCCGCTGGCTGAACATTAGC| |ATCCCGGCGACCACCAGCTCTGTCATGCTGCGTGGCCTCCGGGGCTGCGTCCTGCCTTGTTGGGTGCAAGGCTCGTGCCTGGGCCTGCAATTTACTAACC

Chromosome

chr8

Cytoband

q13.1

Reference genome

Start

End

67741417/66829182 (Hg38)

Orient

+

Location type

Intronic

Target gene

C8orf44-SGK3 ; SGK3

miRNAs that regulate target gene

hsa-mir-21-5p ; hsa-mir-1-3p ; hsa-mir-96-5p ; hsa-mir-16-5p ; hsa-mir-708-3p ; hsa-mir-708-3p ; hsa-mir-32-5p ; hsa-mir-92a-3p ; hsa-mir-92b-3p ; hsa-mir-2681-5p ; hsa-mir-6809-3p ; hsa-mir-6833-3p ; hsa-mir-4768-5p ; hsa-mir-5003-3p ; hsa-mir-2681-5p ; hsa-mir-6809-3p ; hsa-mir-6833-3p ; hsa-mir-4768-5p ; hsa-mir-5003-3p ; hsa-mir-6848-3p ; hsa-mir-5587-5p ; hsa-mir-6843-3p ; hsa-mir-519e-5p ; hsa-mir-515-5p ; hsa-mir-6801-5p ; hsa-mir-378a-5p ; hsa-mir-6131 ; hsa-mir-3663-5p ; hsa-mir-3653-5p ; hsa-mir-5695 ; hsa-mir-519d-5p ; hsa-mir-4716-5p ; hsa-mir-484 ; hsa-mir-3155b ; hsa-mir-3155a ; hsa-mir-4781-3p ; hsa-mir-6848-3p ; hsa-mir-6843-3p ; hsa-mir-5587-5p ; hsa-mir-519e-5p ; hsa-mir-515-5p ; hsa-mir-378a-5p ; hsa-mir-6801-5p ; hsa-mir-6131 ; hsa-mir-3663-5p ; hsa-mir-3653-5p ; hsa-mir-5695 ; hsa-mir-519d-5p ; hsa-mir-4716-5p ; hsa-mir-484 ; hsa-mir-3155b ; hsa-mir-3155a ; hsa-mir-4781-3p ; hsa-mir-212-3p

Nearest miRNA

hsa-mir-124-1/Upstream/2449925; hsa-mir-10400/Downstream/7719361;

Nearest TSS

Nearest CpG islands

None/Target, chr8-CpG: 109/Upstream/53630, chr8-CpG: 53/Downstream/96063

Upstream sequence

tggacgaatgaatggatggTTGAGTCAGTGAAGggatggctgagtgggtggagaaatggatgagtgggtgaggggttggagggataaatggatggatggg

Downstream sequence

TTTGTTTACCGAGTTTCTCCCCATATTCCCAGGCTAATTGATTAGTAATGTCTGCCATGGATTGGAGGAGGAATGTGGTCTTGCTGCCCTTACTTGTAAT