Basic Information
VIS ID
TVIS42000856
Fusion event
EBV-chr8 integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Cell line
Disease
B-cell lymphoma (BL)
Quality evaluation
Normal
Reported year
2005
PubMed ID
15681063
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
133679
Orient
+
Integrated sequence
GCTCAAACGCTGCTTGGTAATCTGTACGGGAACATCAACCAGTGGGTACCGTCCTTCGGACCCTGGTACAGGACCATGTCGGCTAATGCCATGCAGCGGC| |GCGTGTTCCCTAAGCAGCTGAGGGGCAACCTGAACTTTACCAACTCCGTCTCCCTAAAGCTGATGACAGAAGTGGTGGCGGTGCTTGAGGGCACCACCCA
Host Sequence
Chromosome
chr8
Cytoband
q13.2
Reference genome
GRCh37/hg19
Start
68710751/67798516 (Hg38)
End
68710751/67798516 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-124-1/Upstream/3419259; hsa-mir-10400/Downstream/6750027;
Nearest TSS
ENST00000518652/Upstream/52131; ENST00000529398/Downstream/153602;
Nearest CpG islands
None/Target, chr8-CpG: 109/Upstream/454701, chr8-CpG: 64/Downstream/153674
Upstream sequence
CAGTGGAGTTTGGAAACCAGTAGCAGCTGGCGAAAGGACATTTTTTGTAAGGGGAGTGACTAAGGCAGATGCTGAAGATGGAGAAGGATGTGTGTGTGGC
Downstream sequence
ACCTGTTACTTTTCCTTCTCAGGTTCCTGTGTCTGCCCTTCCTAATGAAGTACGCTTTGATTTTTTTTCATAAATGCCCCAAACCACTCACTACTGATCC
Reference
Takakuwa, T., et al. Identification of Epstein-Barr virus integrated sites in lymphoblastoid cell line (IB4). Virus Res,2005, 108(1-2): 133-138.
Curate